Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph chksum_seqval_wf_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_seqval_wf_interleaved_fq.cwl

Branch/Commit ID: 0.4.0

workflow graph bam_filtering

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 1.0.9

workflow graph wf.cwl#UncompressDatatables.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: UncompressDatatables.cwl

workflow graph hi-c-processing-pairs-nonorm.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl

Branch/Commit ID: master

workflow graph exome alignment and somatic variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: somatic_exome_workflow.cwl

Branch/Commit ID: toil_compatibility

workflow graph Functional analyis of sequences that match the 16S SSU

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/16S_taxonomic_analysis.cwl

Branch/Commit ID: 56dafa4

workflow graph QIIME2 Step 3

QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step3-alpha-analysis.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main

workflow graph ST520116.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520116.cwl

Branch/Commit ID: main

workflow graph runner.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/runner.cwl

Branch/Commit ID: 1.1

workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: master