Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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bams2gvcf.woBQSR_female.cwl
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![]() Path: Workflows/bams2gvcf.woBQSR_female.cwl Branch/Commit ID: master |
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standard_pipeline.cwl
This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2 |
![]() Path: workflows/standard_pipeline.cwl Branch/Commit ID: master |
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facets
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![]() Path: setup/cwl/facets.cwl Branch/Commit ID: dev |
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SSU-from-tablehits.cwl
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![]() Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 3b602cb |
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io-union-input-default-wf.cwl
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![]() Path: tests/io-union-input-default-wf.cwl Branch/Commit ID: main |
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exomeseq-gatk4-03-organizedirectories.cwl
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![]() Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: master |
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pileups_workflow.cwl
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![]() Path: 01_mpileups/pileups_workflow.cwl Branch/Commit ID: main |
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WGS QC workflow mouse
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![]() Path: definitions/subworkflows/qc_wgs_mouse.cwl Branch/Commit ID: downsample_and_recall |
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methylCtools_index.cwl
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![]() Path: workflows/methylCtools/tools/methylCtools_index.cwl Branch/Commit ID: main |
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qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
![]() Path: qa_check_subwf.cwl Branch/Commit ID: develop |