Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
chksum_seqval_wf_interleaved_fq.cwl
|
https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_interleaved_fq.cwl Branch/Commit ID: 0.4.0 |
|
|
|
bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl Branch/Commit ID: 1.0.9 |
|
|
|
wf.cwl#UncompressDatatables.cwl
|
https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git
Path: wf.cwl Branch/Commit ID: main Packed ID: UncompressDatatables.cwl |
|
|
|
hi-c-processing-pairs-nonorm.cwl
|
https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs-nonorm.cwl Branch/Commit ID: master |
|
|
|
exome alignment and somatic variant detection
|
https://github.com/genome/cancer-genomics-workflow.git
Path: somatic_exome_workflow.cwl Branch/Commit ID: toil_compatibility |
|
|
|
Functional analyis of sequences that match the 16S SSU
|
https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 56dafa4 |
|
|
|
QIIME2 Step 3
QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: main |
|
|
|
ST520116.cwl
|
https://github.com/Marco-Salvi/cwl-ro-crate.git
Path: ST520116.cwl Branch/Commit ID: main |
|
|
|
runner.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/runner.cwl Branch/Commit ID: 1.1 |
|
|
|
pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: master |
