Explore Workflows

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: 1.0.0

This workflow is intended to be used to test the QC module, without having to run the long waltz step

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow_wo_waltz.cwl

Branch/Commit ID: master

ATAC-seq 01 QC - reads: PE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/01-qc-pe.cwl

Branch/Commit ID: master

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/simulate_data_collection/wf_simulate_data_collection.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines14-wf.cwl

Branch/Commit ID: main

https://github.com/nci-gdc/htseq-cwl.git

Path: workflows/subworkflows/stage_data_workflow.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/timelimit3-wf.cwl

Branch/Commit ID: main

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-lowfreq/pisces-titr-workflow/wf-variantcall.cwl

Branch/Commit ID: master

Mark duplicates

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl

Branch/Commit ID: 1.0.5

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR.multisamples.cwl

Branch/Commit ID: master