Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: caea457
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/azimuth-annotate.git

Path: pipeline.cwl

Branch/Commit ID: d1cc262
workflow graph wf_trim_and_map_chimeric_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_chimeric_se.cwl

Branch/Commit ID: master
workflow graph functional analysis prediction with InterProScan

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: ca6ca613
workflow graph workflow1_11.cwl#VDJ_Preprocess_Reads.cwl

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: VDJ_Preprocess_Reads.cwl
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: 4e9c15b
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: 5dc7c5c
workflow graph test_workflow.cwl

https://github.com/mightqxc/panda-atm.git

Path: test_workflow.cwl

Branch/Commit ID: master
workflow graph vqsr-flow.cwl

run vqsr flow, including vqsr rcal, vqsr apply and plot

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/vqsr-flow.cwl

Branch/Commit ID: master
workflow graph bacterial_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: test