Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 56dafa4
workflow graph rapdb-pipeline.cwl

https://github.com/nigyta/rice_reseq.git

Path: workflows/rapdb-pipeline.cwl

Branch/Commit ID: master
workflow graph 05-quantification.cwl

ATAC-seq - Quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/05-quantification.cwl

Branch/Commit ID: master
workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/bulk_analysis.cwl

Branch/Commit ID: c338cd3
workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/chipseq.cwl

Branch/Commit ID: downsample_and_recall
workflow graph pindel parallel workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: downsample_and_recall
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: master
workflow graph STAR-Alignment-PE-circRNA

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-default.cwl

Branch/Commit ID: master
workflow graph pcr-bottleneck-coef.cwl

ChIP-seq - map - PCR Bottleneck Coefficients

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/map/pcr-bottleneck-coef.cwl

Branch/Commit ID: master
workflow graph split-bams-by-strand-and-index.cwl

Split reads in a BAM file by strands and index forward and reverse output BAM files

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/quant/split-bams-by-strand-and-index.cwl

Branch/Commit ID: master