Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bams2gvcf.woBQSR_female.cwl
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https://github.com/ddbj/human-reseq.git
Path: Workflows/bams2gvcf.woBQSR_female.cwl Branch/Commit ID: master |
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conflict-wf.cwl#collision
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: master Packed ID: collision |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 0cd2d70 |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 5e82174 |
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WES Preprocessing
Whole Exome Sequence analysis Preprocessing |
https://github.com/Duke-GCB/bespin-cwl.git
Path: workflows/exomeseq-preprocessing.cwl Branch/Commit ID: master |
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sum-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/sum-wf.cwl Branch/Commit ID: master |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-wf3.cwl Branch/Commit ID: master Packed ID: main |
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bulk_analysis.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: steps/bulk_analysis.cwl Branch/Commit ID: d0e845d |
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targeted alignment and low vaf variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/targeted_low_vaf_pipeline.cwl Branch/Commit ID: low-vaf |
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FragPipe: Filter - Quant - Report
This workflow takes the PeptideProphet, and the ProteinProphet output files, and applies a stringent False Discovery Rate (FDR) filtering. Peptide and proteins are filtered individually at 1% FDR. The high-quality PSMs, peptides, and proteins are then quantified using a label-free algorithm that uses the apex peak intensity as a measurement. Finally, the isobaric tags are quantified and annotated with the correct sample labels. |
https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git
Path: FragPipe-Filter-Quant-Report/fragpipe-filter-quant-report.cwl Branch/Commit ID: main |
