Workflow: workflow.cwl
Fetched 2025-04-27 13:52:03 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| submissionId | Integer | ||
| synapseConfig | File | ||
| adminUploadSynId | String | ||
| workflowSynapseId | String | ||
| submitterUploadSynId | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| scoring |
steps/score.cwl
(CommandLineTool)
|
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| run_docker |
steps/run_docker.cwl
(CommandLineTool)
|
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| validation |
steps/validate.cwl
(CommandLineTool)
|
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| score_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/score_email.cwl
(CommandLineTool)
|
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| check_status |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
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| upload_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/upload_to_synapse.cwl
(CommandLineTool)
|
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| run_docker_real |
steps/run_docker.cwl
(CommandLineTool)
|
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| validate_docker |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_docker.cwl
(CommandLineTool)
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| validation_real |
steps/validate.cwl
(CommandLineTool)
|
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| get_goldstandard |
steps/get_goldstandard.cwl
(CommandLineTool)
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| validation_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
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| check_status_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
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| get_docker_config |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/get_docker_config.cwl
(CommandLineTool)
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| determine_question |
steps/determine_question.cwl
(ExpressionTool)
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| check_docker_status |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/check_status.cwl
(ExpressionTool)
|
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| upload_results_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/upload_to_synapse.cwl
(CommandLineTool)
|
||
| get_docker_submission |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/get_submission.cwl
(CommandLineTool)
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| validation_email_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
|
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| docker_validation_email |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/validate_email.cwl
(CommandLineTool)
|
||
| determine_submission_number |
steps/determine_submission_number.cwl
(CommandLineTool)
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| set_admin_folder_permissions |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/set_permissions.cwl
(CommandLineTool)
|
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| annotate_docker_upload_results |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| annotate_submission_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| annotate_validation_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| set_submitter_folder_permissions |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/set_permissions.cwl
(CommandLineTool)
|
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| annotate_docker_upload_results_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
||
| annotate_validation_with_output_real |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
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| annotate_docker_validation_with_output |
https://raw.githubusercontent.com/Sage-Bionetworks/ChallengeWorkflowTemplates/v3.0/cwl/annotate_submission.cwl
(CommandLineTool)
|
Outputs
There are no outputs in this workflow
Permalink:
https://w3id.org/cwl/view/git/a67b1e6c55604f6a3b8bba5c9dffd05594a0d5ef/workflow.cwl
