Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: 2e4017d |
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CLE gold vcf evaluation workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/vcf_eval_cle_gold.cwl Branch/Commit ID: low-vaf |
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GSC Paired Jobs
Serial combination of KnowEnG tools |
https://github.com/KnowEnG-Research/cwl-specification.git
Path: code/workflow.gsc.cwl Branch/Commit ID: master |
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main-autofraginfo.cwl
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https://github.com/kyusque/abmp_log_dump2pieda.git
Path: main-autofraginfo.cwl Branch/Commit ID: master |
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chksum_xam_to_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: develop |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 0cd2d70 |
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Quality assessment, amplicon classification and functional prediction
Workflow for quality assessment of paired reads and classification using NGTax 2.0 and functional annotation using picrust2. In addition files are exported to their respective subfolders for easier data management in a later stage. Steps: - FastQC (read quality control) - NGTax 2.0 - Picrust 2 - Export module for ngtax |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_ngtax_picrust2.cwl Branch/Commit ID: master |
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prefactor.cwl
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https://github.com/EOSC-LOFAR/prefactor-cwl.git
Path: prefactor.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/slottad/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: master |
