Workflow: GSC Paired Jobs

Fetched 2022-05-29 05:26:35 GMT

Serial combination of KnowEnG tools

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ID Type Title Doc
taxon String Subnetwork Species ID

the taxonomic id for the species of interest

genomic_file File Genomic Spreadsheet File

spreadsheet of genomic data with samples as columns and genes as rows

pg_edge_type String Subnetwork Edge Type

the edge type keyword for the subnetwork of interest

gg_network_file File GG Network File

gene-gene network of interactions in edge format


ID Runs Label Doc
gsc_runner.cwl (CommandLineTool)
Gene Set Characterization

Network-guided gene set characterization method implementation by KnowEnG that relates public gene sets to user gene sets

knf_runner.cwl (CommandLineTool)
Knowledge Network Fetcher

Retrieve appropriate subnetwork from KnowEnG Knowledge Network from AWS S3 storage


ID Type Label Doc
gsc_drawr_out File
pgkn_fetch_out File