Explore Workflows

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/strelka_and_post_processing.cwl

Branch/Commit ID: master

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/marianas/collapsed_fastq_to_bam.cwl

Branch/Commit ID: 0.0.33_dmp

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: preprocessor_for_oxog.cwl

Branch/Commit ID: develop

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: PreProcessing/preprocess-ont.cwl

Branch/Commit ID: preprocessing

The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file.

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/genome/cancer-genomics-workflow.git

Path: germline_wgs_workflow.cwl

Branch/Commit ID: toil_compatibility

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents3.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/functional_analysis.cwl

Branch/Commit ID: 9c57dba

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/snaptools_create_snap_file.cwl

Branch/Commit ID: 302f1f3

DNase-seq 02 quantification

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/DNase-seq_pipeline/02-peakcall.cwl

Branch/Commit ID: master