Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.0.5 |
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Long-covid.cwl
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https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git
Path: Long-covid.cwl Branch/Commit ID: read-potential-cases-disc |
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oc-workflow.cwl
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https://github.com/karchinlab/opencravat-cwl.git
Path: oc-workflow.cwl Branch/Commit ID: master |
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preprocessor_for_oxog.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/pcawg-oxog-filter.git
Path: preprocessor_for_oxog.cwl Branch/Commit ID: develop |
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cat_fastq.cwl
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https://github.com/ngs-mstb/micgent.git
Path: python/lib/MICGENT/data/cwl/cat_fastq.cwl Branch/Commit ID: master |
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count-lines1-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines1-wf.cwl Branch/Commit ID: main |
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test_workflow.cwl
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https://github.com/mightqxc/panda-atm.git
Path: test_workflow.cwl Branch/Commit ID: master |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: downsample_and_recall |
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exome alignment and germline variant detection, with optitype for HLA typing
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_hla_typing.cwl Branch/Commit ID: downsample_and_recall |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: minibam_sub_wf.cwl Branch/Commit ID: master |
