Workflow: Create Genomic Collection for Bacterial Pipeline, ASN.1 input

Fetched 2021-05-15 07:37:06 GMT
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Inputs

ID Type Title Doc
gc_assm_name String
entries File (Optional)
seq_submit File (Optional)
taxon_db File

Steps

ID Runs Label Doc
Cache_Seq_entries
../progs/prime_cache.cwl (CommandLineTool)
prime_cache
Extract_Assembly_Information
gc_get_molecules.cwl (CommandLineTool)
Extract Assembly Information I
Extract_Assembly_Information_XML
gc_asm_xml_description.cwl (CommandLineTool)
Extract Assembly Information II
Prepare_Seq_entries
../progs/prepare_seq_entry_input.cwl (CommandLineTool)
prepare_seq_entry_input

Create_Assembly_From_Sequences
gc_create.cwl (CommandLineTool)
Create Assembly From Sequences

Outputs

ID Type Label Doc
seqid_list File
asncache Directory
stats_report File
ids_out File
gencoll_asn File
submit_block_template File
order File
Permalink: https://w3id.org/cwl/view/git/7c8eb4d23c3c9859f57421643710c0b6d57b606c/genomic_source/wf_genomic_source_asn.cwl