Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph mpi_simple_wf.cwl

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: main

workflow graph WGS QC workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: downsample_and_recall

workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 3168316

workflow graph sc_atac_seq_prep_process_analyze.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/sc_atac_seq_prep_process_analyze.cwl

Branch/Commit ID: 68e0cc1

workflow graph count-lines6-wf.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines6-wf.cwl

Branch/Commit ID: master

workflow graph pdx-scatter.cwl

https://github.com/WEHI-ResearchComputing/pdx-genome.git

Path: src/pdx-scatter.cwl

Branch/Commit ID: master

workflow graph pack.cwl

create textures and pack them to be a stellaris mod

https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: pack/pack.cwl

Branch/Commit ID: cwl

workflow graph Hello World

Outputs a message using echo

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/hello/hell_17.cwl

Branch/Commit ID: master

workflow graph FASTQ to BQSR

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: downsample_and_recall

workflow graph qiime2 rarefaction visualization

Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step3-alpha-analysis.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-07-alpha-rarefaction.cwl