Explore Workflows
View already parsed workflows here or click here to add your own
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count-lines12-wf.cwl
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Path: v1.0/v1.0/count-lines12-wf.cwl Branch/Commit ID: master |
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assembly-wf-virus.cwl
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Path: Assembly/workflow/assembly-wf-virus.cwl Branch/Commit ID: master |
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dedup-3-pass-distr.cwl
run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode |
Path: stage/dedup-3-pass-distr.cwl Branch/Commit ID: master |
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bgzip and index VCF
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Path: varscan/bgzip_and_index.cwl Branch/Commit ID: toil_compatibility |
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EMG pipeline v3.0 (single end version)
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Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: master |
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cnv_gridss
CNV GRIDSS calling |
Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_gridss.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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Path: definitions/subworkflows/align.cwl Branch/Commit ID: low-vaf |
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NonSpliced RNAseq workflow
Workflow for NonSpliced RNAseq data alignment with multiple aligners. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (trimming) - bowtie2 (read mapping) - sam_to_sorted-bam - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
Path: cwl/workflows/workflow_RNAseq_NonSpliced.cwl Branch/Commit ID: master |
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Long-covid.cwl
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Path: Long-covid---aede7f40-7a21-11ed-b9d2-e51f21933d80/Long-covid.cwl Branch/Commit ID: read-potential-cases-disc |
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Functional analyis of sequences that match the 16S SSU
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Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 8515542 |
