- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
reads1 | File[] | ||
reads2 | File[] | ||
adapters | File |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
all |
pdx-pl.cwl
(Workflow)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
trim-logs | File[] | ||
unassigned | File[] (Optional) | ||
unresolved | File[] (Optional) | ||
human-index | File[] | ||
human-sorted | File[] | ||
human-aligned | File[] | ||
mouse-aligned | File[] | ||
primary_multi | File[] (Optional) | ||
human-compress | File[] | ||
secondary_multi | File[] (Optional) | ||
primary_specific | File[] (Optional) | ||
secondary_specific | File[] (Optional) | ||
gridss-bam-work-dir | Directory[] | ||
gridss-tabix-output | File[] | ||
gridss-vcf-work-dir | Directory[] | ||
platypus-tabix-output | File[] | ||
rename_reads1_trimmed_file | File[] | ||
reads1_trimmed_unpaired_file | File[] (Optional) | ||
reads2_trimmed_unpaired_file | File[] (Optional) | ||
rename_reads2_trimmed_paired_file | File[] (Optional) |
Permalink:
https://w3id.org/cwl/view/git/4bf9858ea46ed81165357e1b15575c581cb5c181/src/pdx-scatter.cwl