Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph packed.cwl#wflow_all_mc.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/packed.cwl

Branch/Commit ID: pack_test

Packed ID: wflow_all_mc.cwl
workflow graph SSU-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: 5e82174
workflow graph 02-trim-pe.cwl

RNA-seq 02 trimming - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-pe.cwl

Branch/Commit ID: master
workflow graph rnaseq-alignment-circRNA-multiple-samples

This workflow aligns multiple samples using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-multiple-samples.cwl

Branch/Commit ID: master
workflow graph Detect Docm variants

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph protein_evidence_mapping.cwl

https://github.com/pvanheus/lukasa.git

Path: protein_evidence_mapping.cwl

Branch/Commit ID: master
workflow graph Per-region pindel

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: downsample_and_recall
workflow graph protein annotation

Proteins - predict, cluster, identify, annotate

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/protein-annotation.workflow.cwl

Branch/Commit ID: master
workflow graph pipeline-se.cwl

ATAC-seq pipeline - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl

Branch/Commit ID: master
workflow graph exome alignment with qc, no bqsr, no verify_bam_id

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_exome_mouse.cwl

Branch/Commit ID: downsample_and_recall