Workflow: REGENIE workflow
Fetched 2024-05-02 04:35:56 GMT
Verified with cwltool version 3.1.20221201130942
REGENIE workflow
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| bed_step2 | File[] |
Array of .bed genotype files for Step 2 |
|
| bim_step2 | File[] |
.bim variant info file for Step 2 |
|
| covarFile | File |
Covariate file |
|
| fam_step2 | File[] |
.fam sample info file for Step 2 |
|
| phenoFile | File |
Phenotype (outcome) file |
|
| bgen_step1 | File |
.bgen file for Step 1 |
|
| covarColList | String |
String with comma-delimited covariates to include |
|
| phenoColList | String |
String with comma-delimited phenotypes to test |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| flatten_array |
flatten_array.cwl
(ExpressionTool)
|
Flatten a nested array of files. |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| sumstats | File[] |
Permalink:
https://w3id.org/cwl/view/git/a661b707fd82032c9acd1d1e562d5e4f90e5d983/cwl/regenie_workflow.cwl
