Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph repliseq-parta.cwl

https://github.com/4dn-dcic/pipelines-cwl.git

Path: cwl_awsem_v1/repliseq/repliseq-parta.cwl

Branch/Commit ID: dev2
workflow graph align-texts-wf.cwl

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-texts-wf.cwl

Branch/Commit ID: master
workflow graph pipeline-se.cwl

ATAC-seq pipeline - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-se.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: fa86fce
workflow graph wf.cwl

https://github.com/KevinSayers/NF_Hello.git

Path: wf.cwl

Branch/Commit ID: master
workflow graph running cellranger mkfastq and count

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph wf_main.cwl

https://github.com/idaks/cwl_modeling.git

Path: yw_cwl_modeling/yw_cwl_parser_old/Examples/main/wf_main.cwl

Branch/Commit ID: master
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-05-phylogeny.cwl
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: develop
workflow graph dedup-3-pass.cwl

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-3-pass.cwl

Branch/Commit ID: master