Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: downsample_and_recall |
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bwa_index
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bwa_index.cwl Branch/Commit ID: 3bb03c9b |
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hello_world_checker.cwl
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https://github.com/dockstore/hello_world.git
Path: hello_world_checker.cwl Branch/Commit ID: 1.03 |
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filter-pcr-artifacts.cwl
DNase-seq - map - Filter PCR Artifacts |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/filter-pcr-artifacts.cwl Branch/Commit ID: v1.0 |
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pipeline.cwl
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https://github.com/hubmapconsortium/create-vis-symlink-archive.git
Path: pipeline.cwl Branch/Commit ID: 6e55233 |
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Produce a list of residue-mapped structural domain instances from Pfam ids
Retrieve and process the PDB structures corresponding to the Pfam family ids resulting in a list of residue-mapped structural domain instances along with lost structural instances (requires Data/pdbmap downloaded from Pfam and uses SIFTS resource for UniProt to PDB residue Mapping) |
https://gitlab.inria.fr/capsid.public_codes/CroMaSt.git
Path: Tools/resmapping_pfam_instances_subwf.cwl Branch/Commit ID: main |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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running cellranger mkfastq and count
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/cellranger_mkfastq_and_count.cwl Branch/Commit ID: downsample_and_recall |
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func_summaries.cwl
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https://github.com/kinow/pipeline-v5.git
Path: workflows/subworkflows/func_summaries.cwl Branch/Commit ID: eosc-life-gos |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: 1.1.3 |
