Workflow: tRNA_selection.cwl
Fetched 2024-10-10 03:21:02 GMT
Verified with cwltool version 3.1.20221201130942
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| model | File [HMMER format] | tRNA model to search with | |
| indexed_sequences | File [FASTA] |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| nhmmer |
nhmmer.cwl
(CommandLineTool)
|
search profile(s) against a sequence database | |
| extract_coord_lines |
extract_coord_lines.cwl
(CommandLineTool)
|
||
| extract_coordinates |
tRNA_selection.cwl#extract_coordinates/extract_coordinates
(CommandLineTool)
|
||
| fetch_aligned_sequences |
esl-sfetch-manyseqs.cwl
(CommandLineTool)
|
extract by names from an indexed sequence file |
https://github.com/EddyRivasLab/easel |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| matching_sequences | File [FASTA] | ||
| hmmer_search_results | File |
Permalink:
https://w3id.org/cwl/view/git/f993cada89d2c6f7480a0d56baa7836a361b1f3a/tools/tRNA_selection.cwl
