Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph exomeseq-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-02-variantdiscovery.cwl

Branch/Commit ID: master
workflow graph consensus_bed.cwl

Workflow to merge a large number of maf files into a single consensus bed file

https://github.com/mskcc/pluto-cwl.git

Path: cwl/consensus_bed.cwl

Branch/Commit ID: master
workflow graph fasta2taxa-plot

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/join-reads2plot.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: main
workflow graph fastqSE2bam.multisamples.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/fastqSE2bam.multisamples.cwl

Branch/Commit ID: master
workflow graph ST520115.cwl

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520115.cwl

Branch/Commit ID: main
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: master
workflow graph mutect parallel workflow

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/mutect.cwl

Branch/Commit ID: master
workflow graph etl_http.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/etl_http.cwl

Branch/Commit ID: 1.0
workflow graph align-dir-pack.cwl#main

https://github.com/KBNLresearch/ochre.git

Path: ochre/cwl/align-dir-pack.cwl

Branch/Commit ID: master

Packed ID: main