Explore Workflows
View already parsed workflows here or click here to add your own
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samtools_view_sam2bam
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Path: structuralvariants/cwl/subworkflows/samtools_view_sam2bam.cwl Branch/Commit ID: 1.0.9 |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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Path: pipeline.cwl Branch/Commit ID: c338cd3 |
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per_cluster_workflow.cwl
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Path: CWL/per_cluster_workflow.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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ST610109.cwl
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Path: ST610109.cwl Branch/Commit ID: main |
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record-output-wf.cwl
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Path: v1.0/v1.0/record-output-wf.cwl Branch/Commit ID: master |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
Path: CWL/Workflows/qiime/join-reads2reference2plot.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 5dc7c5c |
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WGS processing workflow for single sample
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Path: WGS-processing/cwl/helper/bwamem-gatk-report-wf.cwl Branch/Commit ID: main |
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vecscreen.cwl
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Path: vecscreen/vecscreen.cwl Branch/Commit ID: master |
