Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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amplicon_preprocess_workflow.cwl
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https://github.com/kmooog/amplicon-pipeline.git
Path: script/1-preproccess/amplicon_preprocess_workflow.cwl Branch/Commit ID: master |
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Trim and reformat reads (single and paired end version)
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/amplicon/trim_and_reformat_reads.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: f6b5196 |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 135976d |
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exomeseq-03-organizedirectories.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-03-organizedirectories.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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exomeseq-02-variantdiscovery.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-02-variantdiscovery.cwl Branch/Commit ID: master |
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revsort.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/ResearchObject/runcrate.git
Path: tests/data/revsort-run-1/snapshot/revsort.cwl Branch/Commit ID: main |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: d4e5e53 |
