Workflow: exomeseq-03-organizedirectories.cwl

Fetched 2019-06-26 19:03:56 GMT
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Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
hs_metrics File[]
raw_variants File[]
trim_reports 21ef7ceb334c82c560c21d8088e03c58[]
bams_markduplicates File[]
bams_recalibrated File[]
fastqc_reports 8c963b9d678cd7c4ec758dfa9869ce6e[]

Steps

ID Runs Label Doc
org_raw_variants
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_bams_markduplicates
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_trim_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory
org_bams_recalibrated
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory
org_fastqc_reports
../tools/file-pairs-to-directory.cwl (ExpressionTool)
Moves an array of File pairs into a named directory
org_hs_metrics
../tools/files-to-directory.cwl (ExpressionTool)
Moves an array of Files into a named directory

Outputs

ID Type Label Doc
raw_variants_dir Directory
bams_markduplicates_dir Directory
fastqc_reports_dir Directory
bams_recalibrated_dir Directory
trim_reports_dir Directory
hs_metrics_dir Directory
Permalink: https://w3id.org/cwl/view/git/bbe24d8d7fde2e918583b96805909a2867b749d6/subworkflows/exomeseq-03-organizedirectories.cwl