Explore Workflows
View already parsed workflows here or click here to add your own
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wgs alignment and germline variant detection
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Path: germline_wgs_workflow.cwl Branch/Commit ID: toil_compatibility |
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LBA_target.cwl
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Path: workflows/LBA_target.cwl Branch/Commit ID: master |
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collate_unique_SSU_headers.cwl
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Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: ca6ca61 |
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predictions.cwl
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Path: docs/examples/draft/ml-predict-pipeline-streamflow/predictions.cwl Branch/Commit ID: main |
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bam to trimmed fastqs and HISAT alignments
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Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: No_filters_detect_variants |
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wf-loadContents3.cwl
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Path: tests/wf-loadContents3.cwl Branch/Commit ID: main |
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functional analysis prediction with InterProScan
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Path: workflows/functional_analysis.cwl Branch/Commit ID: 9c57dba |
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nested.cwl
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Path: sl_prov_question/scenario3/nested.cwl Branch/Commit ID: main |
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UW GAC (GENESIS) VCF to GDS
**VCF to GDS** workflow converts VCF or BCF files into Genomic Data Structure (GDS) format. GDS files are required by all workflows utilizing the GENESIS or SNPRelate R packages. _Filename requirements_: The input file names should follow the pattern <A>chr<X>.<y> For example: 1KG_phase3_subset_chr1.vcf.gz Some of the tools inside the workflow infer the chromosome number from the file by expecting this pattern of file name. |
Path: vcftogds/vcf-to-gds-wf.cwl Branch/Commit ID: master |
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pdf2wordcloud.cwl
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Path: CWL/Workflows/pdf2wordcloud.cwl Branch/Commit ID: master |
