Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG assembly for paired end Illumina
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https://github.com/FarahZKhan/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v4-assembly-metaSPAdes.cwl Branch/Commit ID: master |
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Varscan Workflow
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: master |
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count-lines11-extra-step-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines11-extra-step-wf.cwl Branch/Commit ID: main |
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rna annotation
RNAs - predict, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/rna-annotation.workflow.cwl Branch/Commit ID: master |
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: master |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: downsample_and_recall |
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rsem_from_sra_wf.cwl
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https://github.com/inutano/sra-star-rsem.git
Path: analysis/processing/readcount/cwl/rsem_from_sra_wf.cwl Branch/Commit ID: master |
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maw_single.cwl
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https://github.com/zmahnoor14/MAW.git
Path: cwl/maw_single.cwl Branch/Commit ID: main |
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pindel parallel workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: pindel/workflow.cwl Branch/Commit ID: master |
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rp2-to-rp2path.cwl
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https://github.com/alaninmcr/test-cwl.git
Path: workflows/rp2-to-rp2path.cwl Branch/Commit ID: 98d5e21affae77ec12ecf300 |
