Workflow: BLASTP, parse, dump FASTA

Fetched 2021-05-15 11:29:24 GMT
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Inputs

ID Type Title Doc
user_outfmt_flag String
user_query File
user_fasta_results File
user_search_db String
user_percent_flag Float
user_idsonly_flag Integer
user_parse_results String
user_target_flag Boolean (Optional)
user_length_flag Integer
user_db_dir Directory (Optional)

Steps

ID Runs Label Doc
blastdbcmd_step
blastdbcmd_docker.cwl (CommandLineTool)
Blastdbcmd to dump seqs/info.
parse_blast_step
parse_blast_report.cwl (CommandLineTool)
Parses BLAST tabular.
blast_step
blastp_docker.cwl (CommandLineTool)
BLASTP search.

Outputs

ID Type Label Doc
blast_out_class File
Permalink: https://w3id.org/cwl/view/git/496b3e2bff8c20d5a7d5c3cbe9b64697767b1c13/blast-pipelines/simple_three_step.cwl