Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: master
workflow graph wf_amr_dna.cwl

https://github.com/ncbi/pipelines.git

Path: amr_finder/wf_amr_dna.cwl

Branch/Commit ID: master
workflow graph Create Genomic Collection for Bacterial Pipeline, ASN.1 input

https://github.com/ncbi/pgap.git

Path: genomic_source/wf_genomic_source_asn.cwl

Branch/Commit ID: dev
workflow graph exomeseq-gatk4-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: gatk4-fixes
workflow graph Single-Cell Multiome ATAC-Seq and RNA-Seq Filtering Analysis

Single-Cell Multiome ATAC-Seq and RNA-Seq Filtering Analysis Removes low-quality cells from the outputs of the “Cell Ranger Count (RNA+ATAC)” and “Cell Ranger Aggregate (RNA+ATAC)” pipelines. The results of this workflow are used in the “Single-Cell RNA-Seq Dimensionality Reduction Analysis” and “Single-Cell ATAC-Seq Dimensionality Reduction Analysis” pipelines.

 https://github.com/datirium/workflows.git

Path: workflows/sc-multiome-filter.cwl

Branch/Commit ID: master
workflow graph personal_genome_input_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/personal_genome_input_wf.cwl

Branch/Commit ID: master
workflow graph example_workflow.cwl

Example CWL workflow that uses some advanced features

https://github.com/mskcc/pluto-cwl.git

Path: cwl/example_workflow.cwl

Branch/Commit ID: master
workflow graph HS Metrics workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph rRNA_selection.cwl

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 5833078
workflow graph ndppp-pipeline.cwl

https://github.com/tammojan/dpppcwl.git

Path: ndppp-pipeline.cwl

Branch/Commit ID: master