Explore Workflows
View already parsed workflows here or click here to add your own
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wf_full_IDR_pipeline_2inputs_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
Path: cwl/wf_full_IDR_pipeline_2inputs_scatter.cwl Branch/Commit ID: master |
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bwa_index
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl |
Path: structuralvariants/cwl/subworkflows/bwa_index.cwl Branch/Commit ID: 1.0.6 |
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qiime2 identify differentially abundant features
Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-09-ancom.cwl |
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dicom-workflow.cwl
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Path: dicom-workflow.cwl Branch/Commit ID: main |
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03-map-pe-umis.cwl
STARR-seq 03 mapping - reads: PE |
Path: v1.0/STARR-seq_pipeline/03-map-pe-umis.cwl Branch/Commit ID: master |
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main-wes_chr21_test.cwl
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Path: wes-agha-test/wes_chr21_test-workflow-arvados/main-wes_chr21_test.cwl Branch/Commit ID: master |
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env-wf1.cwl
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Path: tests/env-wf1.cwl Branch/Commit ID: main |
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EMG pipeline v3.0 (paired end version)
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Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
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CWL4IncorporateTSSintoGXF
CWL4IncorporateTSSintoGXF: mapping CAGE-seq data and add TSS information to GXF format (GFF/GTF) file |
Path: workflow/cageseq_gtf_update_pe.cwl Branch/Commit ID: main |
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Detect Variants workflow
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Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: downsample_and_recall |
