Explore Workflows
View already parsed workflows here or click here to add your own
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canine_tucon_module.cwl
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Path: subworkflows/canine_tucon_module.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 0746e12 |
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bam-genomecov-bigwig.cwl
creates genome coverage bigWig file from .bam file |
Path: workflows/bam-genomecov-bigwig.cwl Branch/Commit ID: v0.0.2 |
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MACE ChIP-exo peak caller workflow for single-end samples
This workflow execute peak caller and QC from ChIP-exo for single-end samples using MACE |
Path: workflows/ChIP-exo/peak-caller-MACE-SE.cwl Branch/Commit ID: master |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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03-map-pe-blacklist-removal.cwl
ATAC-seq 03 mapping - reads: PE - blacklist removal |
Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl Branch/Commit ID: master |
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wf-svcall.cwl
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Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-svcall.cwl Branch/Commit ID: master |
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download_gtf.cwl
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Path: workflow/download_gtf.cwl Branch/Commit ID: master |
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any-type-compat.cwl
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Path: v1.0/v1.0/any-type-compat.cwl Branch/Commit ID: master |
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rhapsody_targeted_1.9-beta.cwl#VDJ_Annotate_Reads.cwl
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Path: v1.9-beta/rhapsody_targeted_1.9-beta.cwl Branch/Commit ID: master Packed ID: VDJ_Annotate_Reads.cwl |
