Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: master |
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wf_get_peaks_scatter_se_nostats.cwl
The \"main\" workflow. Takes fastq files generated using the seCLIP protocol (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5991800/) and outputs candidate RBP binding regions (peaks). runs: wf_get_peaks_se.cwl through scatter across multiple samples. |
https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_scatter_se_nostats.cwl Branch/Commit ID: master |
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exome alignment and variant detection
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https://github.com/genome/cancer-genomics-workflow.git
Path: exome_workflow.cwl Branch/Commit ID: toil_compatibility |
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sc_atac_seq_prep_process_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: 3da5dd0 |
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Add snv and indel bam-readcount files to a vcf
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https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: a8abd0e |
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blast-reuse-image.cwl
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https://github.com/betisb/inputparser.git
Path: cwl/blast-reuse-image.cwl Branch/Commit ID: master |
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methylCtools_singlelib_start_with_trimmed.cwl
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https://github.com/ifishlin/Benchmarking_CWL.git
Path: workflows/methylCtools/methylCtools_singlelib_start_with_trimmed.cwl Branch/Commit ID: main |
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Detect Variants workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: downsample_and_recall |
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Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: master |
