Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: master |
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workflow_mc.cwl
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https://github.com/lukasheinrich/cwltests.git
Path: cwl/workflow_mc.cwl Branch/Commit ID: master |
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qiime2 rarefaction visualization
Alpha rarefaction plotting from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: qiime2-workflow Packed ID: qiime2-07-alpha-rarefaction.cwl |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: master |
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forome_vcf_upload_uri.cwl
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https://github.com/ForomePlatform/vcf-upload-cwl-pipeline.git
Path: forome_vcf_upload_uri.cwl Branch/Commit ID: main |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 536d6ed |
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maw.cwl
multiple mzml files, all with the same condition |
https://github.com/zmahnoor14/MAW.git
Path: cwl/maw.cwl Branch/Commit ID: main |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: dev |
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Process cnvkit outputs
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/process_cnvkit_results.cwl Branch/Commit ID: master |
