Workflow: bwa_index
Fetched 2024-11-27 17:30:15 GMT
Verified with cwltool version 3.1.20221201130942
Modified from https://github.com/kids-first/kf-somatic-workflow/blob/master/sub_workflows/prepare_reference.cwl
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| algoType | String (Optional) | ||
| reference_sa | File (Optional) | ||
| reference_amb | File (Optional) | ||
| reference_ann | File (Optional) | ||
| reference_bwt | File (Optional) | ||
| reference_fai | File (Optional) | ||
| reference_pac | File (Optional) | ||
| reference_fasta | File | ||
| generate_bwa_indexes | Boolean (Optional) |
Steps
There are no steps in this workflow
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| output | File |
Permalink:
https://w3id.org/cwl/view/git/f4c51a054b1ec51d07d89c6a8218e610653675f3/structuralvariants/cwl/subworkflows/bwa_index.cwl
