Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qiime2 DADA2 detect/correct paired sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-dada2-paired.cwl

workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: d3b8e45

workflow graph make_final_outputs_workflow.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/rnaseq_processing/make_final_outputs_workflow.cwl

Branch/Commit ID: master

workflow graph encode_mapping_workflow.cwl

https://github.com/ENCODE-DCC/pipeline-container.git

Path: local-workflows/encode_mapping_workflow.cwl

Branch/Commit ID: master

workflow graph dicom-workflow.cwl

https://github.com/afmam/dicom-cwl.git

Path: dicom-workflow.cwl

Branch/Commit ID: main

workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 1.0.0

workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master

workflow graph no-inputs-wf.cwl

Workflow without inputs.

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/no-inputs-wf.cwl

Branch/Commit ID: main

workflow graph EMG core analysis

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-core-analysis-v4.cwl

Branch/Commit ID: master

workflow graph wf.cwl#VDJ_Analyze_Reads_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: VDJ_Analyze_Reads_TCR.cwl