Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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module-1
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https://github.com/mskcc/roslin-variant.git
Path: setup/cwl/module-1.cwl Branch/Commit ID: dev |
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bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/bam_filtering.cwl Branch/Commit ID: 3bb03c9b |
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metaphlan_wfl.cwl
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https://github.com/stevetsa/Metaphlan-ISBCGC.git
Path: metaphlan_wfl.cwl Branch/Commit ID: master |
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validate_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/validate_interleaved_fq.cwl Branch/Commit ID: 0.4.1 |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 9225fa2 |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: master |
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hashsplitter-workflow.cwl
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https://github.com/uniqueg/cwl-example-workflows.git
Path: hashsplitter-workflow.cwl Branch/Commit ID: master |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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BlastP_RBH_workflow
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https://github.com/ncbi/cwl-demos.git
Path: blast-pipelines/blast_workflow.cwl Branch/Commit ID: master |
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rna amplicon analysis for fastq files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fastq.workflow.cwl Branch/Commit ID: master |
