Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wgs alignment and germline variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_wgs.cwl

Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
workflow graph linc_calibrator.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/linc_calibrator.cwl

Branch/Commit ID: b139045507381d9fdaad02d719c7b9bfe809fec8
workflow graph WGS and MT analysis for fastq files

rna / protein - qc, preprocess, filter, annotation, index, abundance

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/wgs-noscreen-fasta.workflow.cwl

Branch/Commit ID: 662d424d2e433e636f46a79025325d5daaca6271
workflow graph wf-loadContents2.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/wf-loadContents2.cwl

Branch/Commit ID: eb3f25a9e9414a7dba394f7627e02e63d7f1418c
workflow graph GEM peak calling

This workflow execute peak calling using GEM

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/gem.cwl

Branch/Commit ID: 92c23571bd5925c3d33678bc944a8546597cf3a3
workflow graph gathered exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_cle_gathered.cwl

Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
workflow graph ani_top_n

https://github.com/ncbi/pgap.git

Path: task_types/tt_ani_top_n.cwl

Branch/Commit ID: 4b8d11048f1047140b337a2cac6503d80a22d683
workflow graph pindel parallel workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel.cwl

Branch/Commit ID: 70e05adeda8b3b4c77b8947266684ce4305db6ac
workflow graph raw-reads-wf--v.5-cond.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/raw-reads-wf--v.5-cond.cwl

Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775
workflow graph vecscreen.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/vecscreen.cwl

Branch/Commit ID: 068222510fdab75046c7f733a0cc919e36744ade