Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pipeline.cwl
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https://github.com/hubmapconsortium/create-vis-symlink-archive.git
Path: pipeline.cwl Branch/Commit ID: 6e55233 |
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qiime2 create feature visual summaries
FeatureTable and FeatureData summaries from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-dada2-paired.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-04-features.cwl |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: master |
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revsort-single.cwl
Reverse the lines in a document, then sort those lines. |
https://github.com/Duke-GCB/calrissian.git
Path: input-data/revsort-single.cwl Branch/Commit ID: master |
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Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/downsample_and_recall.cwl Branch/Commit ID: master |
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copy_outputs.cwl
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https://github.com/mskcc/argos-cwl.git
Path: workflows/copy_outputs.cwl Branch/Commit ID: master |
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exome alignment and germline variant detection
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/germline_exome_gvcf.cwl Branch/Commit ID: low-vaf |
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download_quality_control.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/sra/download_quality_control.cwl Branch/Commit ID: master |
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hello_world.cwl
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https://github.com/Richard-Hansen/hello_world.git
Path: hello_world.cwl Branch/Commit ID: v1.0.0 |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: caea457 |
