Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752 |
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Gathered Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |
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mergeAndMarkBams_4_1_3.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/mergeAndMarkBams_4_1_3.cwl Branch/Commit ID: afbead8d438d8d975bce7b4044687732e46a353a |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 04d21c33a5f2950e86db285fa0a32a6659198d8a |
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ROSE: rank ordering of super-enhancers
Super-enhancers, consist of clusters of enhancers that are densely occupied by the master regulators and Mediator. Super-enhancers differ from typical enhancers in size, transcription factor density and content, ability to activate transcription, and sensitivity to perturbation. Use to create stitched enhancers, and to separate super-enhancers from typical enhancers using sequencing data (.bam) given a file of previously identified constituent enhancers (.gff) |
https://github.com/datirium/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: 104059e07a2964673e21d371763e33c0afeb2d03 |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: 4636f2c1a8bcfceeb4b3596ee29e9c06311ed4a1 |
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vardictSomaticVariantCaller_v0_1_0.cwl
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https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git
Path: janis_pipelines/wgs_somatic/cwl/tools/vardictSomaticVariantCaller_v0_1_0.cwl Branch/Commit ID: afbead8d438d8d975bce7b4044687732e46a353a |
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02-trim-se.cwl
ChIP-seq 02 trimming - reads: SE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ChIP-seq_pipeline/02-trim-se.cwl Branch/Commit ID: ebd63f705d0fde7290e42c8300d5420c25cfbfe3 |
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Vegetation index
Vegetation index processor, the greatest |
https://github.com/EOEPCA/app-vegetation-index.git
Path: vegetation-index.cwl Branch/Commit ID: d8d651f8109446b50357f859317f3dc8ee5add74 Packed ID: vegetation-index |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601 |