Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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04-peakcall-pe.cwl
ATAC-seq 04 quantification - PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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1st-workflow.cwl
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https://github.com/common-workflow-language/user_guide.git
Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl Branch/Commit ID: 9de553c3a57894808a5af3567b5bf9263d3ea829 |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41 |
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03-quantification.cwl
DNase-seq 03 quantification |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/DNase-seq_pipeline/03-quantification.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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strelka workflow
|
https://github.com/litd/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 18d8efdc4c97c1c9222f603f529b909b36fa42e7 |
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wf_self_consistency_ratio.cwl
Computes the self-consistency ratio (see Gabe's protocols paper, or CHIP SEQ). Given two replicates, split each and perform IDR on each fragment. Returns the ratio of max(N1, N2)/min(N1, N2) where N1, N2 are the numbers of reproducible peaks found between each rep split pair. |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_self_consistency_ratio.cwl Branch/Commit ID: fadfca0f6da710104c4cf7931e9ab2656f5f737d |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: b9e7392e72506cadd898a6ac4db330baf6535ab6 |
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04-peakcall-se.cwl
ATAC-seq 04 quantification - SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-se.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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preprocess fasta
Remove reads from fasta files based on sequence stats. Return fasta files with reads passed and reads removed. |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/preprocess-fasta.workflow.cwl Branch/Commit ID: 9aba38fd1569287b7256ace7163ac84320909f8a |
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scatterfail.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: 84939620c3eec1ab11369849c63237ebfa48da41 |