Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: f10de890d1d2271299931349fa8aea660acef4ee |
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idr.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/idr.cwl Branch/Commit ID: bab73c25f2358d9d76ffff13eeb39a5ece38a795 |
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Subworkflow to allow calling different SV callers which require bam files as inputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/single_sample_sv_callers.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec |
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02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 4e568335133405d28f4b73ae11e7f51f2900dfa3 |
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exomeseq-gatk4-01-preprocessing.cwl
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https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl Branch/Commit ID: fd641e00364e257b2119ce5b26aedb01402dfcbe |
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genomel_individual_workflow.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/genomel_individual_workflow.cwl Branch/Commit ID: 28bb82ba031041321ff9caa5c299ec1bb15d7471 |
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readgroup_fastq_se.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/readgroup_fastq_se.cwl Branch/Commit ID: 1046947f8d2923e6563b3aceac9e435554c5bea1 |
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alignment for mouse with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs_mouse.cwl Branch/Commit ID: 06d2440d115b446c299b4ce96e8812d2f8df86ec |
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04-peakcall-pe.cwl
ATAC-seq 04 quantification - PE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl Branch/Commit ID: 6e008c1170ef818b6c4c63f0eec7baa4f7be7b3c |
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1st-workflow.cwl
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https://github.com/common-workflow-language/user_guide.git
Path: _includes/cwl/22-nested-workflows/1st-workflow.cwl Branch/Commit ID: 9de553c3a57894808a5af3567b5bf9263d3ea829 |