Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Bisulfite QC tools

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bisulfite_qc.cwl

Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion.cwl

Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622
workflow graph Non-Coding Bacterial Genes

https://github.com/ncbi/pgap.git

Path: bacterial_noncoding/wf_bacterial_noncoding.cwl

Branch/Commit ID: 933a0b7554e4ae76a86d25c76b408b5dfc8ed1e3
workflow graph Test GPU

Print GPU info.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/hello_gpu.cwl

Branch/Commit ID: a21728aa0e2dd0ffc1be39fdbf9bc76029e90c66

Packed ID: main
workflow graph process_dl0_dl1_multiple.cwl

Process multiple dl0 files using process_dl0_dl1 and then merge the individual result files into one common output file using the merge tool. This is useful for processing simulation files in DIRAC as processing a single file per DIRAC job would result in very many, very short jobs that are not ideal for the workflow management system.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: datapipe/process_dl0_dl1_multiple.cwl

Branch/Commit ID: 9e14db6574fcec5dd8f4f965c31bffe8e8313366
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort.cwl

Branch/Commit ID: bffea7fd5e864c5221c13a815d00d0a2fad178cc
workflow graph spatial transcriptomics pipeline including analysis with scanpy and squidpy

https://github.com/hubmapconsortium/xenium-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: 3a861e0dda09983a89e7ab48ab57c16d07e75dbe
workflow graph cache_test_workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/cache_test_workflow.cwl

Branch/Commit ID: 22bc7d80dd524767b7d7d115747556ac62c27e9f
workflow graph wgs alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_wgs.cwl

Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622