Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 9c57dba
workflow graph zip_and_index_vcf.cwl

This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: zip_and_index_vcf.cwl

Branch/Commit ID: develop
workflow graph exome alignment with qc

https://github.com/litd/analysis-workflows.git

Path: definitions/pipelines/alignment_exome.cwl

Branch/Commit ID: master
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: no-gpu-for-cwl-vis-only
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 9c57dba
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 5833078
workflow graph star_samtools_stringtie_prepDE_DESeq2.cwl

https://github.com/rawgene/cwl.git

Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl

Branch/Commit ID: master
workflow graph preprocess.cwl

https://github.com/epigenomics-screw/screw.git

Path: cwl/preprocess.cwl

Branch/Commit ID: scatter
workflow graph count-lines2-wf.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines2-wf.cwl

Branch/Commit ID: main
workflow graph topmed-alignment-checker.cwl

https://github.com/FarahZKhan/topmed-workflows.git

Path: aligner/sbg-alignment-cwl/topmed-alignment-checker.cwl

Branch/Commit ID: cwlprov_testing