Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph VIRTUS.SE.singlevirus.cwl

https://github.com/yyoshiaki/virtus.git

Path: workflow/VIRTUS.SE.singlevirus.cwl

Branch/Commit ID: 49faf55f97c8f3084b426d2db6640519d6f2ce71
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37
workflow graph Run genomic CMsearch

https://github.com/ncbi/pgap.git

Path: bacterial_noncoding/wf_gcmsearch.cwl

Branch/Commit ID: 681555881cbdf95a1f4c29f6dc272eb6ca8e4d60
workflow graph iwdr-passthrough-successive.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/iwdr-passthrough-successive.cwl

Branch/Commit ID: 0cbbd92a87b1ba1d484bf50170c2749536fbbe77
workflow graph mut.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mut.cwl

Branch/Commit ID: 22bc7d80dd524767b7d7d115747556ac62c27e9f
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05
workflow graph exome alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome_alignment.cwl

Branch/Commit ID: d297528e53b6c1ecb69b1ab27b8e03323b4463ad
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: baefdcb58fcc76e3378cf705fc6a3e69ef35bb47
workflow graph merge_svs.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/merge_svs.cwl

Branch/Commit ID: e910788d1f62bf470cc71f19af0713b79893f4ee