Explore Workflows
View already parsed workflows here or click here to add your own
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wf-variantcall.cwl
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https://github.com/farahzkhan/bcbio_test_cwl.git
Path: somatic/somatic-workflow/wf-variantcall.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: fa86fce |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: 8515542 |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: master |
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step4: STAR for CAGE-Seq reads analysis
STAR for CAGE-Seq reads analysis |
https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git
Path: workflow/03_star4cageseq_analysis_subworkflow_pe.cwl Branch/Commit ID: main |
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chksum_xam_to_interleaved_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_xam_to_interleaved_fq.cwl Branch/Commit ID: 0.4.1 |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 9c57dba |
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collate_unique_SSU_headers.cwl
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: ca6ca613 |
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rhapsody_pipeline_2.0.cwl#VDJ_Assemble_and_Annotate_Contigs_IG.cwl
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https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Assemble_and_Annotate_Contigs_IG.cwl |
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CODEX analysis pipeline using Cytokit
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https://github.com/hubmapconsortium/codex-pipeline.git
Path: pipeline.cwl Branch/Commit ID: no-gpu-for-cwl-vis-only |
