Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph kf_alignment_optimized_wf

https://github.com/inab/vre_cwl_executor.git

Path: tests/basic/data/workflows/basic_example_test.cwl

Branch/Commit ID: b777e57eb5a86183cb4b10f9039db5cec5c597cf
workflow graph wf_clipseqcore_pe_2barcodes.cwl

Workflow for handling reads containing two barcodes. Returns the bam file containing read2 only. Notes: runs the following steps: - demultiplex - trimfirst_file2string - trimagain_file2string - b1_trim_and_map - view_r2 - index_r2_bam - make_bigwigs

https://github.com/yeolab/eclip.git

Path: cwl/wf_clipseqcore_pe_2barcodes.cwl

Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter-wf4.cwl

Branch/Commit ID: beab66d649dd3ee82a013322a5e830875e8556ba

Packed ID: main
workflow graph Single-cell Reference Indices

Single-cell Reference Indices Builds a Cell Ranger and Cell Ranger ARC compatible reference folders from the custom genome FASTA and gene GTF annotation files

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-ref-indices-wf.cwl

Branch/Commit ID: 9064af1cdd8e97bcdf4473e2a741e1ada1a7c4f3
workflow graph wgs alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/wgs.cwl

Branch/Commit ID: 735be84cdea041fcc8bd8cbe5728b29ca3586a21
workflow graph kmer_seq_entry_extract_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl

Branch/Commit ID: 550682d2fe3348161eab1b8612e48a59af4ac6a5
workflow graph packed_no_main.cwl#collision

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/packed_no_main.cwl

Branch/Commit ID: 912282ed4d528aa33c33b8a8d99e6992b6ded760

Packed ID: collision
workflow graph Unaligned to aligned BAM

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/align.cwl

Branch/Commit ID: baa16f20e91a3f11f8475896e2a66cee183c0d7d
workflow graph revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/revsort.cwl

Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050
workflow graph count-lines5-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines5-wf.cwl

Branch/Commit ID: 6003cbb94f16103241b562f2133e7c4acac6c621