Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph umi molecular alignment fastq workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/umi_molecular_alignment.cwl

Branch/Commit ID: 479c9b3e3fa32ec9c7cd4073cfbccc675fd254d9
workflow graph gdc_dnaseq_main_workflow.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: subworkflows/main/gdc_dnaseq_main_workflow.cwl

Branch/Commit ID: ed98a652e8196296dc3cac7db2e1fa5723d237b4
workflow graph workflow_input_format_expr_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_1.cwl

Branch/Commit ID: 917a880e3a48c2ea7da10aeae20f9a03fb1c6a62
workflow graph setup.cwl

https://git.astron.nl/RD/VLBI-cwl.git

Path: workflows/setup.cwl

Branch/Commit ID: a58fba4c1343bed66a5b47ea6a197b0385dfd39a
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: 7b4b489474473c3d2d992a838b89632c2b97dc2c
workflow graph Perform camera calibration

When DPPS receives a new DL0 data product, the CalibPipe is triggered to process the calibration events. The CalibPipe performs charge integration and peak time extraction for the entire set of calibration events, and computes aggregated time-series statistics, including the mean, median, and standard deviation. Using these aggregated statistics, the CalibPipe identifies faulty camera pixels, such as those affected by starlight, by applying various outlier detection criteria. Time periods with a significant number of faulty pixels, exceeding a predefined threshold, are flagged as invalid. A refined treatment can then be applied to these time periods to account for the issues. Following this, pixel- and channel-wise camera calibration coefficients including the sky pedestal offsets per waveform sample, flat-fielding coefficients, and pixel timing corrections are calculated as a function of time. When multiple DL0 files are provided, they must be parallel data streams and/or subsequent chunks of the same observation block.

https://gitlab.cta-observatory.org/cta-computing/dpps/calibrationpipeline/calibpipe.git

Path: workflows/telescope/camera/uc-120-2.20-perform-camera-calibration.cwl

Branch/Commit ID: 71af73ce66c822c87d88786b2c120677d51ed35f
workflow graph count-lines1-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/count-lines1-wf.cwl

Branch/Commit ID: 2c48ccc9c67e4d5671ec32d2182d25d7a0bb631d
workflow graph module-5

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-5.cwl

Branch/Commit ID: bffe2339db0b056a61514d75773f793920b6750e
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: 8b0cacc5510eb3eed4e6d6db4bb844cc6114b1dc
workflow graph exome_metrics.cwl

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/exome_metrics.cwl

Branch/Commit ID: 3cb464a3a5c39cc060cd23d9c60918bc9ffb169b