Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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harmonization_novoalign_multi_readgroup.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/harmonization_novoalign_multi_readgroup.cwl Branch/Commit ID: master |
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Functional analyis of sequences that match the 16S SSU
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/16S_taxonomic_analysis.cwl Branch/Commit ID: 9c57dba |
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wf_multiple_writers5.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/additional_test_cases/wf_multiple_writers5.cwl Branch/Commit ID: master |
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chksum_seqval_wf_paired_fq.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_seqval_wf_paired_fq.cwl Branch/Commit ID: 0.5.0 |
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rsem_from_sra_wf.cwl
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https://github.com/inutano/sra-star-rsem.git
Path: analysis/processing/readcount/cwl/rsem_from_sra_wf.cwl Branch/Commit ID: master |
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Apply filters to VCF file
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https://github.com/genome/cancer-genomics-workflow.git
Path: detect_variants/filter_vcf.cwl Branch/Commit ID: toil_compatibility |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/mr-c/datirium-workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: license_test |
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wgs_variant_calling_bam.cwl
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https://github.com/cr-ste-justine/chujs-alignment-workflow.git
Path: workflows/wgs_variant_calling_bam.cwl Branch/Commit ID: dev |
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pipeline-fastq2vcf-opt.cwl
DNAseq pipeline from fastq to vcf |
https://github.com/Sentieon/Sentieon-cwl.git
Path: pipeline/pipeline-fastq2vcf-opt.cwl Branch/Commit ID: master |
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Long-covid.cwl
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https://github.com/cwlviewer-test/Long-covid---aedea650-7a21-11ed-b9d2-e51f21933d80.git
Path: Long-covid---a7602980-7a21-11ed-b9d2-e51f21933d80/Long-covid.cwl Branch/Commit ID: read-potential-cases-disc |
