Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
mut3.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut3.cwl Branch/Commit ID: 4c2667ef937c341af26e4f72b01056a06dce84fb |
|
|
|
kmer_cache_retrieve
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 8af4e2aabf43d5e3c7162efae4ad4649df5601e2 |
|
|
|
merge and annotate svs with population allele freq
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: 60d8a9e6c5f571ec9b37f10290a1f4613013f3e1 |
|
|
|
scatter-wf1.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-wf1.cwl Branch/Commit ID: 6397014050177074c9ccd0d771577f7fa9f728a3 |
|
|
|
group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: d80d4f126eb60579dc3c3faf90996acc802155f2 |
|
|
|
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 8cc9b995bca666c54c673a5eb8d9b8c6f8e84490 |
|
|
|
RNA-Seq alignment and transcript/gene abundance workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 3bebaf9b70331de9f4845e2223c55082f5a812fb |
|
|
|
trim-rnaseq-se.cwl
Runs RNA-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-rnaseq-se.cwl Branch/Commit ID: 94c6ea7bf4b64599746d778568efbd8e10f0d5ba |
|
|
|
gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl
|
https://github.com/wtsi-hgi/arvados-pipelines.git
Path: cwl/workflows/gatk-4.0.0.0-haplotypecaller-genotypegvcfs-libraries.cwl Branch/Commit ID: b7aa668822c782191d0fe5641467885c023cc256 |
|
|
|
screen out taxa
Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files) |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/organism-screening.workflow.cwl Branch/Commit ID: 2addcde0f4c1c8547f7f3906c2523cded23e9869 |
