Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment with qc
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: master |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: master |
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Apply filters to VCF file
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: low-vaf |
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umi molecular alignment workflow
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: downsample_and_recall |
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workflow.cwl
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https://github.com/screx/cwl-tutorial.git
Path: bioinformatics/tools/workflow.cwl Branch/Commit ID: master |
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sc_atac_seq_prep_process_analyze.cwl
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https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git
Path: sc_atac_seq_prep_process_analyze.cwl Branch/Commit ID: 3da5dd0 |
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umi duplex alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/duplex_alignment.cwl Branch/Commit ID: master |
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ex_wf.cwl
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https://github.com/idaks/cwl_modeling.git
Path: cwl_example_user_guide/ex_wf.cwl Branch/Commit ID: master |
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Uses Bruker TopSpin to convert a zipped NMR data directory to JCAMP-DX
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https://github.com/NFDI4Chem/formaTAPIRest.git
Path: cwl/zipped2bruker2jcamp.cwl Branch/Commit ID: main |
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Build STAR indices
Workflow runs [STAR](https://github.com/alexdobin/STAR) v2.5.3a (03/17/2017) PMID: [23104886](https://www.ncbi.nlm.nih.gov/pubmed/23104886) to build indices for reference genome provided in a single FASTA file as fasta_file input and GTF annotation file from annotation_gtf_file input. Generated indices are saved in a folder with the name that corresponds to the input genome. |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: master |
