Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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SSU-from-tablehits.cwl
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https://github.com/farahzkhan/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: master |
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Variant calling workflow for given interval
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https://github.com/arvados/arvados-tutorial.git
Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl Branch/Commit ID: main |
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Dockstore.cwl
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https://github.com/kathy-t/ghapps-single-workflow.git
Path: Dockstore.cwl Branch/Commit ID: master |
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workflow.cwl
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https://github.com/Sage-Bionetworks-Challenges/Anti-PD1-DREAM-Infrastructure.git
Path: workflow.cwl Branch/Commit ID: master |
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exomeseq-gatk4/v2.0.3
Whole Exome Sequence analysis using GATK4 - v2.0.3 |
https://github.com/bespin-workflows/exomeseq-gatk4.git
Path: exomeseq-gatk4.cwl Branch/Commit ID: v2.0.3 |
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downsample unaligned BAM and align
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: downsample_and_recall |
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module-4.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/module-4.cwl Branch/Commit ID: master |
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rnaseq-star-rsem-deseq2.cwl
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https://github.com/pitagora-network/DAT2-cwl.git
Path: workflow/rna-seq/rnaseq-star-rsem-deseq2/rnaseq-star-rsem-deseq2.cwl Branch/Commit ID: main |
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packed.cwl#wflow_all_mc.cwl
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https://github.com/mr-c/cwltests.git
Path: cwl/packed.cwl Branch/Commit ID: pack_test Packed ID: wflow_all_mc.cwl |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
