Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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811-12.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/811-12.cwl Branch/Commit ID: 256306a5da1eb0a8391d5f6734e7baae96922079 |
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samples_fillout_index_batch_workflow.cwl
Wrapper to run bam indexing on all bams before submitting for samples fillout Also includes steps to pre-filter some maf input files NOTE: each sample in a sample_group must have a .bam file, and there must be a minumum of 1 .maf file amoungst samples in the same sample_group this means that for each sample in the sample_group, a .bam is required but a .maf is optional as long as one sample in the group has a .maf this also means that singleton sample groups, or a sample group with only one sample, MUST include a .maf file; singletons cannot lack a .maf NOTE: all .maf files must be valid, at a minimum they must have a header and at least one variant if a sample has no variants in its .maf file, or has an empty .maf file, then it should NOT have a maf_file entry associated with it |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/samples_fillout_index_batch_workflow.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 5d5c4b4ed6d6de42eda2c68aefcf738c201517fb |
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count-lines9-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines9-wf-noET.cwl Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83 |
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dynresreq-workflow-inputdefault.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/dynresreq-workflow-inputdefault.cwl Branch/Commit ID: ad91c844b5adfef514c059af364e20afc935e598 |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 9a03dbe8829ca649814d9c8bd11fe3a673750a95 |
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delay-calibration.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/delay-calibration.cwl Branch/Commit ID: c8adbbe43d59cea1b1bc31e2867258016f0b6a7b |
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Protein_Inference_workflow.cwl
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https://github.com/adamscharlotte/CWL-workflow.git
Path: Protein_Inference_workflow.cwl Branch/Commit ID: 8d88bba0d293228e28217f4a6fc3081db4459bb1 |
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count-lines5-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines5-wf.cwl Branch/Commit ID: ad91c844b5adfef514c059af364e20afc935e598 |
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assemble.cwl
Assemble a set of reads using SKESA |
https://github.com/ncbi/pgap.git
Path: assemble.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
