Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: 71d9c83
workflow graph exome alignment and somatic variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: somatic_exome_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph qiime2 identify differentially abundant features

Differential abundance testing with ANCOM from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-09-ancom.cwl
workflow graph RNASelector as a CWL workflow

https://doi.org/10.1007/s12275-011-1213-z

 https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/rna-selector.cwl

Branch/Commit ID: 1b0851e
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/rnaseq_star_fusion.cwl

Branch/Commit ID: low-vaf
workflow graph md_launch_mutate.cwl

https://github.com/douglowe/biobb_hpc_cwl_md_list.git

Path: md_launch_mutate.cwl

Branch/Commit ID: main
workflow graph pcawg_oxog_wf.cwl

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: develop
workflow graph SetParameterFromExternal

Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert).

 https://gitlab.desy.de/gernot.maier/cwlsandbox.git

Path: workflows/SetParameterFromExternal.cwl

Branch/Commit ID: main
workflow graph workflow_mc.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/workflow_mc.cwl

Branch/Commit ID: master
workflow graph workflow_data.cwl

https://github.com/lukasheinrich/cwltests.git

Path: cwl/workflow_data.cwl

Branch/Commit ID: master