Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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waltz_workflow_all_bams.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: f09502839916ff50bdd7e1b69f2fc4f17c8416b4 |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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04-peakcall-pe.cwl
ATAC-seq 04 quantification - PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
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01-qc-pe.cwl
ATAC-seq 01 QC - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
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harmonization_bwa_mem_prod.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_prod.cwl Branch/Commit ID: d777030ca3654fe78462ee69adcbd8221303b006 |
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05-quantification.cwl
ATAC-seq - Quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/05-quantification.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
