Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Detect Docm variants

https://github.com/genome/cancer-genomics-workflow.git

Path: docm/workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph STAR-RNA-Seq alignment and transcript/gene abundance workflow with Xenosplit

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion_with_xenosplit.cwl

Branch/Commit ID: master
workflow graph alignment_bwa_mem_no_trim.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem_no_trim.cwl

Branch/Commit ID: master
workflow graph chksum_xam_to_interleaved_fq.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_xam_to_interleaved_fq.cwl

Branch/Commit ID: 0.5.0
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: master
workflow graph linc_calibrator.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_calibrator.cwl

Branch/Commit ID: master
workflow graph download_quality_control_single_rename_spot.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/sra/download_quality_control_single_rename_spot.cwl

Branch/Commit ID: master
workflow graph wgs alignment and germline variant detection

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_workflow.cwl

Branch/Commit ID: toil_compatibility
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: master
workflow graph Per-region pindel

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: downsample_and_recall