Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 1585504ccffafac53b1594349ed934f45206ee2b |
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LBA_calibrator.cwl
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https://git.astron.nl/eosc/prefactor3-cwl.git
Path: workflows/LBA_calibrator.cwl Branch/Commit ID: cff7fed6aa41fb1ccacd5235dec289b4e7ef70eb |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 88f1e02b261bf9ce882eba306b6245c64328632b |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 55e85a6c1a3d3ae2b47e9ae5363132a12824b1d9 |
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fastqtosam_pe.cwl
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https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/fastqtosam/fastqtosam_pe.cwl Branch/Commit ID: 3ae43ed82a98144cfd50d3b5d65f47ce63cbec7c |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 3bd060365f24a480b04951a3a75da807d42f010f |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: f7ac3eff79128831c9f7a565d5b187882f39aa58 |
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md5sum_v12.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/md5sum_v12.cwl Branch/Commit ID: 1a01b0220aa6bbd76e81ceb19a892ac69d6047ec |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: be32f1363f9a9a9247d738e9593b207e9c5172c8 |
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pipeline-se-blacklist-removal.cwl
ATAC-seq pipeline - reads: SE - with blacklist removal |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/pipeline-se-blacklist-removal.cwl Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685 |
