Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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calculate_contamination_workflow.cwl
GATK4.1.2 Calculate tumor-normal contamination workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/calculate_contamination_workflow.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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filter_alignment_artifacts.cwl
GATK4.1.2 Alignment artifacts filtration workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/filter_alignment_artifacts.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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mutect2_calling.cwl
GATK4.1.2 Mutect2 workflow |
https://github.com/NCI-GDC/gatk4_mutect2_cwl.git
Path: subworkflows/mutect2_calling.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
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Unaligned BAM to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr.cwl Branch/Commit ID: 6bfb64375e7ebb6eb40f463ede86d8deccdb9eff |
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bgzip and index VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827 |
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tt_kmer_compare_wnode
Pairwise comparison |
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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fp_filter workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fp_filter.cwl Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 60d8a9e6c5f571ec9b37f10290a1f4613013f3e1 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: e4d6182d5f7a6a880e5f2b21273cf40d25e187df |
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blastp_wnode_struct
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017 |
