Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph 1st-workflow.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/1st-workflow.cwl

Branch/Commit ID: a67c898958f6affc8cb9de05fe87c9228a4fc63e
workflow graph Assess the statistical description of calibration events

When DPPS receives a new DL0 data product, the CalibPipe is triggered to process the calibration events. The CalibPipe performs charge integration and peak time extraction for the entire set of calibration events, and computes aggregated time-series statistics, including the mean, median, and standard deviation. Using these aggregated statistics, the CalibPipe identifies faulty camera pixels, such as those affected by starlight, by applying various outlier detection criteria. Time periods with a significant number of faulty pixels, exceeding a predefined threshold, are flagged as invalid. A refined treatment can then be applied to these time periods to account for the issues.

https://gitlab.cta-observatory.org/cta-computing/dpps/calibrationpipeline/calibpipe.git

Path: workflows/telescope/camera/uc-120-2.21-assess-statistical-description.cwl

Branch/Commit ID: 0ef4c7080b3137b590a437b811fba3c6c2556494
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 41c6490b9249bb793428a62fcbfe6006f20e2c06
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827
workflow graph count-lines4-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines4-wf.cwl

Branch/Commit ID: 17268d1493d9e558113b2c35c0be6b3fb961b2a3
workflow graph foreign_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/foreign_screening.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: 94c6ea7bf4b64599746d778568efbd8e10f0d5ba
workflow graph mutect2_calling.cwl

GATK4.1.2 Mutect2 workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/mutect2_calling.cwl

Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca
workflow graph Downsample and HaplotypeCaller

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/downsample_and_recall.cwl

Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
workflow graph bam_readcount workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_readcount.cwl

Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05